Function reference
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add_otu() - Add OTUs as row names
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clean_colnames() - Remove pattern from column names
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clean_metadata() - Only keep shared samples between metadata and MetaPhlAn profile
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col_to_rownames() - Set a column as row names
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filter_taxa_lvl() - Filter MetaPhlAn profile by taxonomic rank
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filter_threshold() - Apply threshold filtering to a data frame
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capitalize_str()lowercase_str() - Modify the case of the first letter in each word of a character string
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get_taxa_table() - Get taxonomic table
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list_example() - List example files
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load_metaphlan_profile() - Load MetaPhlAn profile(s)
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merged_abundance_profiles - Merged MetaPhlAn profiles data
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metaphlan_to_phyloseq() - Convert MetaPhlAn profile to phyloseq object
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shorten_clade_names() - Shorten clade names in a dataset to chosen taxonomic level
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single_abundance_profile - SRS014470-Tongue_dorsum_profile data
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species_only - Merged MetaPhlAn profiles data to species level